NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209353_10101829

Scaffold Ga0209353_10101829


Overview

Basic Information
Taxon OID3300027798 Open in IMG/M
Scaffold IDGa0209353_10101829 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000813Metagenome / Metatranscriptome880Y
F002241Metagenome / Metatranscriptome579Y

Sequences

Protein IDFamilyRBSSequence
Ga0209353_101018292F002241GGAGGMAKQENGGKPHSIRYIRQLMEWGFDKEFIAKDCGINLASLETRLRRQEERERNGNQRTEPRTGSSKSDS
Ga0209353_101018293F000545N/AMDENWFRWALGLSEMIKDAHPFPCSNCKLVTPHIELKRFNTENVAEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGYKMKAASCKVCRIAAGFERISEKYWTGNATLTKDYDAEI
Ga0209353_101018294F000813N/AQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCAGGDGPMILKQGSKEGKEYRGWVCPTPKSGHPAKWMKIGSDGHWVFQK
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