NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209358_10037883

Scaffold Ga0209358_10037883


Overview

Basic Information
Taxon OID3300027804 Open in IMG/M
Scaffold IDGa0209358_10037883 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2921
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003603Metagenome / Metatranscriptome477Y
F026195Metagenome / Metatranscriptome198Y
F035764Metagenome / Metatranscriptome171Y
F091936Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209358_100378831F091936N/AMRLKLAIEEMLKDIDMSGEEWNDRDKDGVAYWEKWDKADDR
Ga0209358_100378832F035764GGAMIDKLISILFKWTGFREALFAEVNFYNSINRTMKDPESMKTASAFWDEGDGWRGWSIEGNKYYFNDVPEHDLMGVILSIEEMAKA
Ga0209358_100378835F026195AGGAMGFLDNLEQYIDFQEDIDKDPELQSGYSTGKWSDEDDSHPVITPVFGPNR
Ga0209358_100378836F003603AGGCGGMKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRIVEVVAWIVEKQAERYRREVANDGTVCEGLIIANHLDKVIDKIKITNELKSVQLPITPKERREFVKSLPEAKEQNYRYSWLHQTNDTNKVTIEHPFI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.