NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000121

Scaffold Ga0209229_10000121


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000121 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28740
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (82.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005909Metagenome / Metatranscriptome386Y
F013279Metagenome / Metatranscriptome272Y
F017972Metagenome237Y
F023834Metagenome208Y
F026864Metagenome196Y
F055450Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000012138F013279AGGAMQYDYRCTECNAELTIERSIHEQPREPSCFECHIPMIRKWDSPSITFKGKGFYSTDK
Ga0209229_1000012139F017972AGGAGVRTRHLSLVTQRHSVTTTTKSNVSSPFGPVSPGSTTLLAQETLRANQEARLLELLNSLENVVDNLNFKSFTAYDTLVIATEGVRVALSNIATEEAGTDTL
Ga0209229_1000012140F055450GGAGGMETENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRVRTADGRGAPVLKEDIHKGTNEGNNRGEA
Ga0209229_1000012145F023834GGAGGMSEPTVDYWRAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVDTFNEGGQDEQA
Ga0209229_1000012147F026864AGGAGMMSEQDKMAQFVFTVVIVPDNKRYEVELWDFAGEEPALIAAGEGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV
Ga0209229_100001215F005909N/AMENYEEDITKYPTPDKQYEGAMKFQSYESVQTGAMGKSAK
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