NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000403

Scaffold Ga0209229_10000403


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000403 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17727
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047677Metagenome / Metatranscriptome149N
F066778Metagenome / Metatranscriptome126Y
F072341Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000040315F047677AGAAGMNWLKSIFSNDKDASSKRVASILALVVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFTKKKSNDEGSN
Ga0209229_1000040322F066778AGTAGMRAGAHTSKIILMSYTREINWDKLKPTIDWDEQEERLADKLSKLIQTQINNRQMNQSTVKSQKFVRTWDGPSGAIHYFDLVLDNGEVGQVGVKDMNSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGRGSSSAPSGGSSYTPRKESPEVQNSISKSVALNNAVLFCKETKGSKPSDVLDTAEIFLAWLKNEHVEAVIETKLAITNESSDDEMPF
Ga0209229_1000040327F072341N/AMSKRLGALAHQSFSRSLSAEESNVVEAINSPKLHSLSEKEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRTTSIKDWQNAFLLNAVGKEWERVDAYNLFSISFMADVFKKYEEYKAKTWRELNKALILPEAEPREYTPTNPIDDLHADAERYKNGKQTWVEISAPYNCQRLFRQGIYKKSDWIPEVWERMDDLAEQRIAQRWKDANKLRNEGTEQDFINAKKIELSRIVYIDIIKQIIKES
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