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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027805 Open in IMG/M |
| Scaffold ID | Ga0209229_10002039 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8260 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sandusky Bay, Ohio, USA | |||||||
| Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F003603 | Metagenome / Metatranscriptome | 477 | Y |
| F004666 | Metagenome / Metatranscriptome | 428 | Y |
| F024786 | Metagenome / Metatranscriptome | 204 | Y |
| F026195 | Metagenome / Metatranscriptome | 198 | Y |
| F092053 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209229_1000203910 | F001460 | GAGG | MLGYTEEDLNRMINAIHDVKLFYLRSPSDLMNKDPLVKDLQDAVSFMQGLWAEGYFD |
| Ga0209229_1000203912 | F092053 | AGG | MKLSSEVKEDLQDQADQIIYFESAMSNEDKASKAVYQRLVEIYKVAYEAGVNSK |
| Ga0209229_1000203913 | F000263 | AGGAG | MIPDTLELPAHLQRMVDAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNEA |
| Ga0209229_1000203915 | F000441 | AGGAGG | MKMSDPYIDEQLSKAQKLLWGGSETENIEAHNIISKLIRDRMSEQEGQNV |
| Ga0209229_1000203916 | F001019 | AGGAGG | MSNYGPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDIPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMREMLDNL |
| Ga0209229_1000203917 | F024786 | GAGG | LTTYRVFGTKYHNYYTIIDAADQFEAVDMANKLEAHNWFEIATDDVIEATDVYLNEDTSMDVQLNI |
| Ga0209229_1000203918 | F004666 | GGA | MTTKREYLATKGITVGKRGRFSSAANKALQDAAAQGVTFESEKPQPKK |
| Ga0209229_1000203919 | F003603 | AGGCGG | MQSKEHKLGELLANSVEDHFFNPAALGRYLAEQPVYTVDRVIEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKVIDKIKISNDLKHVQLPITPKERGEFIKDLPEIQEQNYRYSWLHETNNGSNANINVTPTL |
| Ga0209229_1000203922 | F026195 | GGA | MSKATRKGRERMMGFLDNLEEWLDFEEEIDKDPEIGYSTGKWSDDDDIHPTITPFISPIR |
| Ga0209229_100020397 | F000450 | GGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKVAIIDFEQQTFSLHEEAPRNDKDNKVSGMSNQAIFTMDLSNFVEKYADVVISV |
| Ga0209229_100020399 | F002387 | GAGG | MSDPHGIIGHYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIYYEFNKFYNLKEGDEDYLC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |