NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10006260

Scaffold Ga0209229_10006260


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10006260 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4970
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F006385Metagenome / Metatranscriptome374Y
F026557Metagenome / Metatranscriptome197Y
F038479Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000626010F026557AGGCGGMINSVLTIPCDECNSSGLIFFGDGNDYDVETCECDFGIEQDNLLNNN
Ga0209229_1000626012F038479AGGMNTLPLDQKIAIAAQMIVDGKPVSFRGASPDTVMKVERLAKRIKQELEFPQCPCGSCE
Ga0209229_100062603F000808GAGGMEYNYSITFSYDGELFSTMRTADLMEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0209229_100062607F006385GGCGGMILDTGTLIAITIALAGSVGMMIAFWKHNIKLEKEIRRLQVALRTERLKK
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