Scaffold Ga0209229_10010880

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209229_10010880

Scaffold Ga0209229_10010880

Overview

Basic Information
Taxon OID	3300027805 Open in IMG/M
Scaffold ID	Ga0209229_10010880 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3839
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100108801	F000258	GAGG	MANYKLDAMFEIRKFLWNRLTWLGIFDESDYYSDNLGEALVPIVPVQQQPEMNQFLSGKKHIVYDKVGMSYENNWMICCEQILLTLYSPDLLDIVEIRNFLTDEFRRMDESARDVNKWAGLSDKFKFHSIHIADISST

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