NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10034850

Scaffold Ga0209229_10034850


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10034850 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F023330Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100348505F023330GAGGMTNQENDNVKEIRELLHPKDYSRAMDLRGEPIGDVCVCGGDVFHALVAFDESELCFYFLDGECANCGSMVTLPYPKNENTF
Ga0209229_100348506F002301AGGMYVDEYGAMVTALAAEYHRKYQMTEQSDIQQVLWLWFVSHPQKYKEWSELEQKDRDKLIARSLRNAAIKYCEKEKARKIGYEILDLYYYNASVIEAFLPSIIAESYEIPIAIKDLNYKFSKGESNDTNNWLVLRSDIATAYYRLSDAKQNVLRIKYSAENVEWSQLADELSTTPDGARMKVQRAISSLIRNLGGHRPYSEEDTLIEADDDESGE
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