NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10039894

Scaffold Ga0209229_10039894


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10039894 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2077
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100398941F012862N/AWKKTGNKNARLFKLNKISEEGLSFRVNYDFLPSRSLVPSSNSRRRHMFAEKAVVMEKGNPLVIRPKNSERLVFEVDGETVFMPKGAAVTVRRPGGSAARNQFSLAHSRFFSGRLVNESIKKSGFQRIFNSSMTKALRVPSNIKKVQYTFSANTIRSQADSALSLSFGGAM
Ga0209229_100398942F000258GGAGGVTANYKLDAMLELRKYLWHELYTRGIFDEENYWSDNLNENIVPIIPIQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQVLFTIYSTSVADINEIRNYMTDEFRRMDESARNINQWKDLSNKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL
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