NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10165957

Scaffold Ga0209229_10165957


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10165957 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F011742Metagenome287N
F046909Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_101659573F011742AGGAGMQTIEFVPFEWEDDDFNPEIDRIEVDYVWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT
Ga0209229_101659574F002764AGGAGMKEPEDEAFDELAKRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGLKTK
Ga0209229_101659575F046909AGGAMKAPPPSKELCLMMAKINYPRDSALSWTWLFAWGFHEMY
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