NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10347719

Scaffold Ga0209229_10347719


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10347719 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014007Metagenome / Metatranscriptome266Y
F080959Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_103477191F014007N/APLPANAAEALPELSREQEIEMRARTIKLISDLTGIPIVPTQENKDEAEELARQMIDDPKKRIEYSKYPNETMAWLAGMIQQSNCSLVDDLAEYKNYVINKLVAEIETTSDSKLRIQALTKLGEVDGVDAFKKRSEVTHVIKPIEEIEKELIQAINVLENVEYRVIEDKNAANNG
Ga0209229_103477192F080959AGAAGMQQITAESLQKLRAALPTMPEKDKRRVADLLKQYQNQITRQLGKDSF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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