NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10008789

Scaffold Ga0209985_10008789


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10008789 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7180
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F012013Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0209985_1000878911F000450GAGGVGDRANFGFVQPNGETIVLYGHWAGYHMLANLAEAVAKAQPRWSDPSYATRIAISNLIGDGWSMETGWGLHVNEIGDNEHKIAIVDFTQMTFSLHEEDSFYNLDNKVRGMKNDALFTMDLRAFVEKYTDAPILV
Ga0209985_100087896F012013AGGAMAELDLQEATRRDDIYNELNQIVDKITTLPVFPSLLWVWTFDVMRNIYENNQYDDLAENDYVDEAVPSGITLKQIFDKFWEDVDGIGLSMDLGDEIIDETIRDWMRDNNFLVALDEDGWL
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