NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10029889

Scaffold Ga0209985_10029889


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10029889 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3243
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F012767Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0209985_100298892F002540AGGAGGMPTYEATPEELEKYGAGLSIWQQIALLQAWAPLIGYGQRFVNEVDPYRKGLVVAEAAEWVASRTDAKLDDQLVKLLADILRTPQGEALVRFALLQAEAAK
Ga0209985_100298894F012767GAGMRGNTATISLTAFRADWLTHMPMRALCERYTISRDQVVRLKHCWNLPPRHDRRLRAKPVRQRDPTPREIAQACREIQATWSQAVREDRQVTKPKPVTLKRVEMSDEARQAADEQSDEVQW
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