Scaffold Ga0209985_10092300

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209985_10092300

Scaffold Ga0209985_10092300

Overview

Basic Information
Taxon OID	3300027806 Open in IMG/M
Scaffold ID	Ga0209985_10092300 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1573
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005047	Metagenome / Metatranscriptome	413	Y
F014230	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209985_100923002	F005047	GGA	MTPDAITRLFKEAYDTFPPLEGKPTDDDLLAIRECILPLLMVIPYDQLNGIHSLTAILTDAAKYDSEHGNAPFVRPIRLPLYDKNIADDATTVIRVRAEAAHKSRLDDYASYEAAERGVAKFLRDVVDEIWYNDLKDAETFYTKVTAIEIMALLDANSGGLHAVDMISLRTNMTQYYVQADGIPQFIVMMEDAQKRRNGQACPSPMLNL
Ga0209985_100923003	F014230	N/A	PALPLSAMEIKFELDTDKAARATVAIAASYGLGPVSEGTEYPQLAFANAIALIIIIAILYSTGPAVAKKTTTQ

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