Scaffold Ga0209354

Basic Information
Taxon OID	3300027808 Open in IMG/M
Scaffold ID	Ga0209354_10001158 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027808 Open in IMG/M

Scaffold ID

Ga0209354_10001158 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11648
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11648

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F017628	Metagenome / Metatranscriptome	239	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209354_1000115812	F017628	AGG	MATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPTEFQTDLNPYIDRKELIPADEKRILPPRSKDLPDEGSQVHFFGATNMPHPSDPQSDKKVQINFRKYDNGVITLRQRRNHFSGDGSIGASCYWRTHQQVWSEAT
Ga0209354_1000115816	F001915	N/A	DVDDIVELADSVFGMEADGILTRDRNVFRKNVTITATVQLFDKGKEFLAVCRPVDKSVDNLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLPVRQRVKLIHEMIDQHILWAHSWGIPVICSTSIRSEHDGFMRIHKKRGFTTNGSYAWIRTENAIKGLT
Ga0209354_100011588	F004695	AGGA	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQSNQATEMVKYMINSKNDSYACIRDWAQDSLLHKNGIVMVSPVRDPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVNLEGVMQEMMTPDDEPGTMQEEVNDAILANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFLGFYDPMTIHECKAQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDATKHIYEFGAMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAAICGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFGQAMMALDPSVPELFSKIRRPYEDENRLTRQQLIGQAQQQFGQAMMALDPSVPELFSKIRRPYEDTLRVLGVKDVDAYLPTLEEAAKIIQAQAAKGPSAEQQETQSKTDLNKAKTDETIANTLFTQKKAEDIDTDNMFEALAAKRDKLHSVQVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209354_10001158

Overview

Ecosystem & Geography

Associated Families

Sequences