NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209354_10077685

Scaffold Ga0209354_10077685


Overview

Basic Information
Taxon OID3300027808 Open in IMG/M
Scaffold IDGa0209354_10077685 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209354_100776852F065732N/AMATLIMEKELSLEERIQWALRAGLSQERIDFLLSCPKYTRAGRDGRDPIIKAENPNHHLQKLGDCWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGKPIPHLNNK
Ga0209354_100776853F058813N/AMTTMAAPTLVLICGYARAGKDTLASGILEWATRPSRKQNFADYLKDAANDYLMSLNLEGDFHNEPFKVQNRDFLVAAGRLARSIDKDIFAKNLAYYCPIQMTPGEQAPETVICSDWRYTNELVVCQEILHDLGWKVRTVYVSTAGIGPANNEELDSILDIRERHCFDLELTFAPNSRNAIMQEGRYIAKTWRL
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