NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209574_10235620

Scaffold Ga0209574_10235620


Overview

Basic Information
Taxon OID3300027809 Open in IMG/M
Scaffold IDGa0209574_10235620 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)600
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033294Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209574_102356201F033294GAGMNSVLNLNTTWTAANFLNYVGYSFSKTVTDWYDSLSEDCKNTLIIMETPAAMFRSLCKKIETEFIGTKIDSEEKARG
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