Scaffold Ga0209302

Basic Information
Taxon OID	3300027810 Open in IMG/M
Scaffold ID	Ga0209302_10000023 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027810 Open in IMG/M

Scaffold ID

Ga0209302_10000023 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	108613
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (17.17%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

108613

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (17.17%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	78.8669	Long. (^o)	-3.2286	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean

Coordinates

Lat. (^o)

78.8669

Long. (^o)

-3.2286

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y
F049219	Metagenome / Metatranscriptome	147	Y
F067122	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209302_1000002332	F067122	N/A	MYRSNYKSLFRCHTLTECVNYSLDSSVSKADLFLFLLDTYDILLSHADGSMIFDDDDDLPYLRLAEKLEKYAFVHWHTLFDRIPGQLKGWCEGMFLYVCCSKCRWLASKPGCTVVPSETRDWMKEHRLRTHASYDTASWTAGDLLNALDVLEMKWFEFKTIDQHFMIYLNTLEFRAAWFVAHTAPSGIYDIQKHRIKVSEQQFQIHPALLHDFYVRFMGLRRSFAQSIMFDAQPPIKNMPESRWDEFIEKENRHLSIRKFRDRIADLTWENMARLSDTPRVSYECRGSRVSAYQSVASNRPLSLLDKLNSVCAYSKPPVVHANKFVIEGLHLQMVHAHFMSTYSVNFKNFFFCSSEKSWKHRQTLITSVVPIILERRSRFDVMHRGLIHLVPVGTFAEAFQLWLLIVRRDYRGILYGSMDFGRLCRMMFDPPEAAQQRQISEGAVAYQWDV
Ga0209302_1000002347	F017048	N/A	MWYLNVNCIRRVKKNMSNFNYEPSKSSLRADTVVEFVNRSLLDFKMNEIPGMGPASISKFSDHGIYTPAQIVAKFLSYVDSHDTTGQQVCESFYNWANPIMGKANTHNLTFAMANYCSEHGLFSLDD
Ga0209302_1000002349	F031650	N/A	MRKNNRNLNYISKKKMDEHMDSMSQEEFDELKLAYQEASPAGDALKQQLKAHNKEQKARLNQIHSYMRENNIMSADIGGITIEREEKTTVSVSVKTLEEVFDNPADLEQYKRDHTTTKEVLKIRKPKRRRTSDE
Ga0209302_1000002366	F049219	AGG	MLANETDKLLGIRLETLENGVKQLDGRVQSLDDKVSHVIQMNSELMIQSNENFREIRGQLDDNRRELKKSIHQIRGRWSTQCYVIAFAMGLTSWTIFMAWVLWH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209302_10000023

Overview

Ecosystem & Geography

Associated Families

Sequences