NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10003336

Scaffold Ga0209302_10003336


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10003336 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9375
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (93.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005796Metagenome / Metatranscriptome390Y
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y
F104567Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_1000333615F047922AGGAGMIPQAIVDYKNRWKMAAYFLVHVHTDLRSEVKEWCKEHCFQWRYDIKRYTDNYTDTVSFELSEDCDAFQEWYQERYDG
Ga0209302_1000333617F025150GGAGMINVSTEGKQLPEYDTFIDECIMALFPHDAHYDINIWFKKYVDKDGTHAGFCMGDKVESAIDIATHWMYEDAEEVAYQPHEIASNIAHELVHAKQFYKGQINMVDHVWKHNHETINCAGLEYAETPWEVEAYAYEDILTDLLWENV
Ga0209302_1000333619F005796GGAGMLELSIFMFCMIGCGLTCHALGKQEGIESTIEHLVDKGLIELDD
Ga0209302_100033364F104567GGAMWQQHLDLQFPLTQQLGLDLDVPESGEPNWKTLYTNVSTTTIDAVWDWEQVYNITVSNSNGDEAARIDDTGISLRMENKSWLKTKVANWIGVKYL
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