Scaffold Ga0209302_10014950

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209302_10014950

Scaffold Ga0209302_10014950

Overview

Basic Information
Taxon OID	3300027810 Open in IMG/M
Scaffold ID	Ga0209302_10014950 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4551
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	78.8669	Long. (^o)	-3.2286	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090256	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209302_100149504	F090256	AGGAGG	VQSNTSTVTIDTGELGEQIVEEHFKHAERSDDWYDSEKDGTIKDKTYEVKTFRLNNRDQGFWVESSQFRKLDNVDILYFVKIPESLEEGATIYECLNHTGEDAYEAFTLGATKQMRCYFIDNCKLIKNVNDERTTTIYENSIAMSKHNRFS

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