NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000014

Scaffold Ga0209656_10000014


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000014 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)135287
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)100 (72.99%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001364Metagenome / Metatranscriptome713Y
F004142Metagenome / Metatranscriptome451Y
F025556Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_10000014111F025556GAGMDTIKGWYKVTMNSGEYKAKRVALEDSFETLFEQHGSPDGAALFSRRDEKSATWEYYFTPEAMTFSLDLIKEYAWGKEYAWGQACSAPPATVKNLSLCGGNVGKYAYLVQSSS
Ga0209656_1000001455F001364AGGAGGMLSLLLVVCVILQFHYHDAIPWYIWVVAAIAQCVAFGEPAMRAASKKS
Ga0209656_1000001471F004142GAGVFGPDGIWARFLGRAEGFIATDVKYESLPEAGSDGRYRVRDFWKGHRGFEIFRERFSEDFAQFDRRIVDELVEKQEFVGGYYEGDGDEHRSA
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