Basic Information | |
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Taxon OID | 3300027812 Open in IMG/M |
Scaffold ID | Ga0209656_10000151 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 44571 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (72.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001356 | Metagenome / Metatranscriptome | 716 | Y |
F007039 | Metagenome / Metatranscriptome | 359 | Y |
F008510 | Metagenome / Metatranscriptome | 332 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209656_1000015115 | F007039 | GGA | MSIRGSVVGRVLLIDVVASVAVLGLWYLVFSHYNRKKGAAVLRWVQSACVGKGRILESNWMGTSRLQARLHFPSRWFDNARVTVKFRPRALPIQWLISCWHKQKETLTFEADLDGSPSFRLEVVRHRWCAHNRGISSPKRDDREWDVYEPGAVILTTRTHWKQDPSAELNALMSARRQEFLEVHFRPESPQFSAVVHLESLADPNAATDFVSALREIAAGASTHRQ |
Ga0209656_1000015120 | F001356 | GAGG | MPKENKGSAPRPTLKYRQLAVADLNRGRRGKHHELVEGILKELKMAAPGSALEIPLADVGGIGLANLRSAVHRASAAESLPIETLADEKNFYVWKK |
Ga0209656_1000015134 | F008510 | AGGAG | MKQAVRISILMCGLVGTYVVAAVPQVPAPDGGPILVCPPQQQLQGRCVQLPPMMK |
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