NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10013661

Scaffold Ga0209656_10013661


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10013661 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5070
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002159Metagenome / Metatranscriptome589Y
F020939Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_100136611F002159GGAMAVAERQVAPGETACFPFAARTAYGIPSIHDFNVISENPDFNPEWVRLRRSAGDSYGPHYILEITPGDIARSQYGAYPLHLSWGEAGTYRYAGARCALIIRPCVRAVTEPAVKIWPAGQVCLLLENHGSTGIDVSVSIRHHGSGWSKEWEFELPAKDDPFSFSGRFDPPAGKRSGDF
Ga0209656_100136614F020939AGTAGGMPYGPSPREPRPPKESRAKPVRITVDLTPADYQILNRWLARAGVELDEPLSKMTLARGIRAMIRATAADHVVNDVVLDLMRREQS
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