NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10108462

Scaffold Ga0209656_10108462


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10108462 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009021Metagenome / Metatranscriptome324Y
F055935Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209656_101084621F009021GGCGGVSSPGLPDTWTATGPAVRLAAVPALRLRDRPDPWLRTGSMVGMIFPLVGQPGHGRTAFVRRQPARIVDGRVQGGYTDVFELICPGCGDNPYVDYSEVPSRLQRLRGPLTLEAALEAYDKHLASLPGPNGDSAES
Ga0209656_101084622F055935GAGGMGALFILCGILVGLAVYRSGEARARWQSLKASRTTVRNQRNTAWRHAGSAALYVVGAVFLLFIVLKLLK
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