Scaffold Ga0209090_10004373

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209090_10004373

Scaffold Ga0209090_10004373

Overview

Basic Information
Taxon OID	3300027813 Open in IMG/M
Scaffold ID	Ga0209090_10004373 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8800
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051480	Metagenome / Metatranscriptome	144	Y
F068149	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100043731	F068149	AGTAG	MTFNEFQTNFLTFVQTSIEPKKDDGFPVCPYARSARIKQTLQFIDARDDLTTMTSFDPNAFQMGICWLGDLDDMSMVEKYCAQLGEENPKLLYFTSTRSSGHFVKNFTDCVFIQRADDLLEKRDHLHTTAYYDSWPVDYYKLITDHS
Ga0209090_100043732	F051480	N/A	LIASRQPEQIVKIVEQYNKEMAKLESNYIDIVIRSEGSFSYQDIMTMPVNSIQLLVERMNNRVEEINKSRK

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