NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10328196

Scaffold Ga0209090_10328196


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10328196 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013705Metagenome269N
F064111Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209090_103281961F064111N/AMKKPQLTNKKGTMKIKCIKCNKKHDQENMCLSINDIIENHVKEKTINDFEKNYLKGMSIENAFCGTCASQSLKIMEGKL
Ga0209090_103281962F013705GGAMTNKLQNKIDELIKLEELHNIKEQYRQHEKTKSLYEQIDFKPIPQEIMDQCNNEWED

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