Scaffold Ga0209726

Basic Information
Taxon OID	3300027815 Open in IMG/M
Scaffold ID	Ga0209726_10000461 Open in IMG/M
Source Dataset Name	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027815 Open in IMG/M

Scaffold ID

Ga0209726_10000461 Open in IMG/M

Source Dataset Name

Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	76513
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (76.92%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

76513

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (76.92%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.292222	Long. (^o)	-73.604444	Alt. (m)	Depth (m)	5.4
Location on Map

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Source Dataset Sampling Location

Location Name

S. Glens Falls, New York, USA

Coordinates

Lat. (^o)

43.292222

Long. (^o)

-73.604444

Alt. (m)

Depth (m)

5.4

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F013685	Metagenome	269	Y
F032806	Metagenome	179	Y
F081922	Metagenome	114	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_1000046143	F013685	GAGG	MKNVLRNLLLGLLIGIILAPSTAKAQFTVFDPAQYTLQIERQIEEANRWLERVKHYSEEINKLAEQLSTMKGVLGQAEKLVLHNANLTRTMAQLGQTVRDVFALKRAIETMVISRLSMIKSIKTRLMSGIFDPQADLRDFEDYLRDSIGRTSQDKIATMNRIAMFDATLARLYHDLQTAQAKQAGAAEQMKQAKDKLDAELAKPQAEQCATCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWDNLNIVKDGVFQAIENGGMPPRRP
Ga0209726_1000046145	F032806	AGG	MRARPIRPNIYLPVVRFGVADSDWFSVLLISCVGYLAPVPFGITLLYIPLQMWTWLLATAGSIAFFNYVRIGRKPYWLQHQLKGLFLNHRQHRAIPNGRRSGSDRSWIIDLEAGVAFSESDGSPPFQTVNSVLLQHNNGIQEACEERWNALWVTTN
Ga0209726_1000046146	F002416	AGGAG	MSYLIETMNAPILNCSRAARMGRRLVALGLGMKALNGVVAVVLMMALGVVSASAQTPSGSFFNGNSGQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAGCFAFGGICAAIYAFSQGDTVPLDNQF
Ga0209726_1000046152	F081922	GGAGG	MRERGNIWPVVSVAVGAFFVLVIVPLIIERERSGRMATVDAQVSIGDAGTIASSPSEITKYRWPDSEVPRTAERLQDVTGVAIAATAYVVEGSMNGRTPRDAGEIIAGITRRNLIPKDWLTNQVGVLRTQHATVHLRYSPRNLSVELISVPNERADGPAILIRVPDSENTTVGTRYFESMQLDGIVYPNPFAPIADIIASGWQPRLFKQTQIADADRAQLEQWAKAANRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209726_10000461

Overview

Ecosystem & Geography

Associated Families

Sequences