Scaffold Ga0209726_10010468

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209726_10010468

Scaffold Ga0209726_10010468

Overview

Basic Information
Taxon OID	3300027815 Open in IMG/M
Scaffold ID	Ga0209726_10010468 Open in IMG/M
Source Dataset Name	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9375
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.292222	Long. (^o)	-73.604444	Alt. (m)		Depth (m)	5.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001289	Metagenome / Metatranscriptome	730	Y
F013117	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_1001046810	F001289	GAGG	MKNPYDVLRMKEQDLVRVRKEMEALRIAARLLGAEDPAAASGENPPKLRHVVEMP
Ga0209726_100104684	F013117	N/A	MQKIGFLLTCVLSLGTIGEAQTVTVSLLEDLSSKLPTGTAFTARDPAGKVYTGHVVTHPARRLLRRGSMILVFDDPVVPVTKDREGVLRAGNKMRLLKLAGSLVAAKLADDAVDGAIGATKARYVAAGVSVALMVFQKGGEATLHKGDTIDVEPRRTTVGGSN

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