Scaffold Ga0209726_10017296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209726_10017296

Scaffold Ga0209726_10017296

Overview

Basic Information
Taxon OID	3300027815 Open in IMG/M
Scaffold ID	Ga0209726_10017296 Open in IMG/M
Source Dataset Name	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6407
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.292222	Long. (^o)	-73.604444	Alt. (m)		Depth (m)	5.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024750	Metagenome / Metatranscriptome	204	Y
F067563	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_100172961	F024750	GGAGG	MKLSRNELEFLAAWAREEWEPACYQLPAHRLQLAHGVPGATMIVLIKAWSKAERKKDQEILHVSLNREPNWPWSTMEELRARLEEASTERAHQETPAA
Ga0209726_100172962	F067563	N/A	VPTAAADTTCAAQRVADRYTGLYERVSAADVPPGGNVAMAPWPYQPCPHPSCRQPITDLLAEMLPNADRTSPEFKSVVGQMPGGAITCPYCQEAVEYGTDGATLAVSAKTPLRYSRAKMEMRATDYGSQKSPPDPGMTPEQWIAEEKLMPGALQGYKYVEDLTP

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