NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209726_10021513

Scaffold Ga0209726_10021513


Overview

Basic Information
Taxon OID3300027815 Open in IMG/M
Scaffold IDGa0209726_10021513 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5462
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008142Metagenome / Metatranscriptome338Y
F016892Metagenome / Metatranscriptome244Y
F057963Metagenome / Metatranscriptome135Y
F075145Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209726_1002151310F008142AGGGGGMKRYVLTLAWILWAHETAQVGDQLIDRGYTAIDSFETRQLCHAAMTDYAGLKLVRQGKVRLEFSCLPEKPSPKGPRTVVG
Ga0209726_100215135F057963N/AMRQLQGALKGRASAVTGLVTVLTLVSLPVEVTIGFVEHPVVAPAPVVSLLLIGSCLLLVGSGLGLRRLEAARAGARRPTPGV
Ga0209726_100215136F075145N/AMLDTGGHARLLHVAIWLATLFFTAMLFVPLLREALRRVTELPSGGHF
Ga0209726_100215138F016892GGAMQWLSSRSVATVWLLAALSLVGWLIVNLDVAGWIILVVTVGLMAFELTRRRDGQGTRRKARVPDKPTG
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