NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209726_10035761

Scaffold Ga0209726_10035761


Overview

Basic Information
Taxon OID3300027815 Open in IMG/M
Scaffold IDGa0209726_10035761 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3734
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008809Metagenome / Metatranscriptome327Y
F011181Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0209726_100357614F011181GGAVSITESLVVVKLDHNGEQAPLVFEVLEQAGLLGEVSEHGVETVEPGALGFRVPRERMDAVVLALECGGFVNVRAYDVQAGRDSAR
Ga0209726_100357615F008809AGGGGGMKKILGYVRDEQGVETLEWIAVGALIVAVAIAVYPGVLQAALITVVGEISTALTGIL

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