NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209726_10115338

Scaffold Ga0209726_10115338


Overview

Basic Information
Taxon OID3300027815 Open in IMG/M
Scaffold IDGa0209726_10115338 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1582
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079741Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209726_101153382F079741AGGAGMEKLDIGTVIQDAISRFSQNRSGDKPPVFVTLAPAMTQVLWENQSAETFMRRFVYETLLTSDPEAPIEVSLRCKPSLSDLNAFIGIKPNYWIQLRISGRGIRIGEKVIEELFDELGFRVEEWVGVEGSDTRLGIFGTIDAPIVKMVFCLQSVRHKLKCDLLLPIHERSGHPEIIPRDQDRHPLHV

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