NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10048980

Scaffold Ga0209990_10048980


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10048980 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2165
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F031758Metagenome / Metatranscriptome181N
F039102Metagenome / Metatranscriptome164N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209990_100489801F031758AGAAGVKMSVNKSQEKELLIKNLFKLINEMFIVKPGVTFDEIVLQVRDTKKRILEIDPNWKLGNKYFHYVHEVISLIDEVDTLEETNLEKQRKTFRKILKTTKIMRQTDQLWRMNPTIILDFLKWNSKIIMSTEQISKKPKEQVPID
Ga0209990_100489802F019779N/AMESYIKMKEHPAIDVEGEEDRFSETLDSPDSENEIECSNERCFTPPEDDWEIIGRGSDFIIHGLETLDEQLDIIATRIDTENEKEEILKNIRKGFSIIDDIILYATTFINEANKAKVEKFRGFISDLLNFAKTNITKTLVIVRKLRARNLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKESLKEYRSTIRRRISRRYSI
Ga0209990_100489803F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETKMVRKTNQSWRLNVPKLVEFMTEISKVTHSDKVEPMETEEVSKPSISN
Ga0209990_100489804F045559N/AMDLTFENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKDVDPGWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCYEARMQKYKIVIQ
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