NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10083381

Scaffold Ga0209990_10083381


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10083381 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1571
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012105Metagenome283N
F041721Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0209990_100833811F012105GGAGGMIPLAIRRHHLQDLTLGQSVVLTVPHCEERQIRRAVGTVNAERTDGLRLKTLRTPDGLLVWLVESVDIADCPEWQTGKSRRFPGRDPVAVGKAVVKLNEWARVMRRPYRFRVVVRDLVPIVLKLPKNKTIRIRREAELSRVMKAVERLRAGQGTVVRGVERCDIVRAKWRMKKRGIRFIV
Ga0209990_100833812F041721GAGMESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRNGRITGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHMVETFWRQTLRQWQAYRHLGELLQAAEDCTPETHEQAWRAVYECLGWNPDTARERYLERRAGK
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