Scaffold Ga0209514_10001049

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209514_10001049

Scaffold Ga0209514_10001049

Overview

Basic Information
Taxon OID	3300027819 Open in IMG/M
Scaffold ID	Ga0209514_10001049 Open in IMG/M
Source Dataset Name	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	51393
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (59.57%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location Name	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-73.604444	Alt. (m)		Depth (m)	5.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209514_100010492	F001368	GGAGG	MDRDAATTNRLRNLISKIKSQTESGALHWERQVGSAHRYARLNNNLLILGPASPLSNQRVPRYLFITPFESPDCIEINSNDAELGLALVALVQTVEAASDKEPPTDPFALTGDLLERLTN

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