NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10000230

Scaffold Ga0209039_10000230


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10000230 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52624
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (76.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013877Metagenome / Metatranscriptome267Y
F017275Metagenome / Metatranscriptome241Y
F033558Metagenome177Y
F039020Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000023024F039020GGAMTGISGAAAARAADALIRTMGGTEVILLFPAAEMPADAVAALGLLDPGVVQAAISPVIVREFTMESGGLRPRVSDGPRRQIELLAGVSAMAEQVSQRNVASADVLFETALGLVYDGEVFHIQGFVVERLAGVAYLYRVAAVS
Ga0209039_1000023028F033558AGGMSENDSRPTPPILLPLVEFIDRTLEAERKLTEAEFRRRDAALEAHARMNDLRQEAGDAKIQKADAVLEYRLEEMNNFRTQINQERTEYLRREMFDREHSALSDRVKSLEIVRGEQSGKTAAYASMVGFVVVLVQVVLHFWK
Ga0209039_1000023035F017275N/AMMMLTQVAPTFWSSYGAATVAFAGFLVNGVLAYGAAQKLTGQREQQRIEDQAWKKEHTAQANVRDIAIAALQAMGSSNEATVKGIQGQLLLIQTEPQELRNRASTPRQK
Ga0209039_100002309F013877GAGGMNFIGRTEDSEIQVELKYCERCGGLWLRPQGADGVYCDSCRVRLAAMRNPEEAAPRKARRRKARAQGTEVQREDLQSPARIEYLQGVAAMEVWA
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