NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10000673

Scaffold Ga0209039_10000673


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10000673 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32792
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008316Metagenome / Metatranscriptome335Y
F072889Metagenome / Metatranscriptome121Y
F072972Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000067315F008316N/AMSLKSAAFFALVGMILLTVLLAAGFIRDISALLAGALAAVALLKSGIHLLASLSVTVFLYAFHKAQS
Ga0209039_1000067316F072889AGGAGLPNRRRTLVSVLFLGCTFAHAQTIAFQIQTHSGSPIALVDYTPGTFRIEGDRRQFLTVQNQSDKGMTALVFQQAIGSGSKTEIVTLERVSILMRPREKKRLSVSVQNVWDRIQTAGKAGETIGRPSLSVVAVEFLDGSSWNVP
Ga0209039_100006733F072972N/AMHKLLVIGLIVWYPGLLAGQGFGKLKKTIVLERKLPAAVKLPGNAFDVKVSAEKPQDPCSKLAADKLQPMIETNLIRFNSQLELNPDKPDTLIVLKVLICNAAATPKYDTLLSGKSKGQQQPSGVKVNGRLEVTYQARTRAGKFVDAEPIDVKYEHEFDQVSSAVSEAKKILSKIPRPGARRRNDEGEDEPHTIEDVIEILVDRTAQRVAARLVNTSERVEVMLARGALDQNNRNADAGQWTKFVEELETMPPLAHLEDDAYRLYNIGVGDEALGYKAESPASARRYFEQAVMQYRKAGEAYPQEKYFIEPVNRIEVALEHYKQLTPPAEPPAAKAPVKKGKSK
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