NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10005239

Scaffold Ga0209039_10005239


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10005239 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9041
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100052392F000512GAGMIQVLRETHDTPEEVARRLEAAGGRNRFGEANYRVIWGWNRLAWIGGKFGDRDAHGDLIREVVELRLEPKYPQLNRWHVERWVPPEMYGSPRDWYAKTVESANGVSVPALGPFPERGEYEHCFTLQGPKGEFVQLTPPIVEHVARAIEWAKHFPKSKQRGMLYEREAREEREYEEWAYTLMDDAVPALHGQPFVTVA
Ga0209039_100052394F000739GGGGGMGEANSRLRIWLKGIVAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATIRIGAAAALINAVIGVAAYLQKSPLPEE
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