NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10029096

Scaffold Ga0209039_10029096


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10029096 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2687
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F020070Metagenome226Y
F048483Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100290962F001643GGAGMNIPTDTLIDMLYIILAGEVAISASDAAEIEQIQRELQRRGDEQCRSFQAVN
Ga0209039_100290963F020070GGTGGMPTSNTYARSASVAFPSAIGCRASSVIAFGCVLVVIGAYCVCPSVFAQTSDSRTAEEPTNSWTAITELKSDDLIPERIPARIIESHSQNGNRTLDTRSVEIRGTDGHFEPYQEIERETLTVDASTVRTTMRTFARDVNGGGALVQVTEEEKHTLPGDDSNIVRVTYNPDVNGRLQPVQREIVETKEIGKDLEEANTTVMLSSVNGALAPVFKTHELRKRASNDTVETEKTTWLPDVNGKWQLSEIRRSITTQEAKDCKIEEKVFRPDAEGKLGQISGVVSQESESTSGEKRSVVETYSIDVPGTTRDGSLHLVERKTSTGSLSSTGERATEQKIEQTNPGDPGSGLRVFVLVDGKIVPGPSGEQSTVTIRARDSNGNFGIVSVDTTKADRIPTIQVQQAPAENP
Ga0209039_100290964F048483AGGAGGMCSPMLTVQATPASASLVPPVHEKYEAESNPLHMKWVLIDDTKGNPRAQMRWVVNR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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