NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000025

Scaffold Ga0209060_10000025


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000025 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511435
Total Scaffold Genes436 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)340 (77.98%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000655Metagenome / Metatranscriptome958Y
F000771Metagenome / Metatranscriptome897Y
F001520Metagenome / Metatranscriptome679Y
F003445Metagenome / Metatranscriptome486Y
F005420Metagenome / Metatranscriptome401Y
F014777Metagenome / Metatranscriptome260Y
F050313Metagenome / Metatranscriptome145Y
F087516Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000002512F050313AGGLDAIPNGFKVAPVNRTLTHAALLLLVSPVMVCQTQGHAPDCSTLKYSRHKVSCLCGTVQVCSGDICGPPSVYELDDDIAVELRAKNGTILDTQKLVVETREMQGATQDGTKTSYKQTERRFCFEGKQDGDYVLAFVLHKKGIPQPAVIFPTNYAHKRRKSCDSIYMVEPLCPR
Ga0209060_10000025159F000655N/AMIWWFLILGVSTLVVVCVAIALFVHLRRHLHKAHDGTTDMERQTNQLKS
Ga0209060_10000025161F003445GGAGGMAFPENEPTIQRGDPTIQLIDLLVARLEECLGEVLPLETDDLLKDYAQNARNSTASAIEQLRLARARKEQQLGGRTK
Ga0209060_10000025186F000771GAGGMKKVLSVSALALSFVAGAALSAQVRDWHDLDGVHKHVNEAIREMERARAANHYDMDGHGVKAEEHLRAAERELDMAVQAARR
Ga0209060_1000002519F087516AGGAGLTFCLANATGQAKVLTNDPLTGLPLIPATVLFKNVGNEPDKLSDVQVCKSKGQGNFYSLSNIMNPASGLKMDAAAAWYASHLSGFKKVQGYESGRSQIAFYNSDKTIVILLTGQLGAEGENANAYGVSYERFQPGISEKAIGPNTGQVHLQLIGAERC
Ga0209060_1000002523F014777AGGMSAGNKTLIQILAASFALCVTASAQCPLNTLIVKGHVVENANAHSKVRVQLVYPKEKPGEAGEATVEDGSFQIPIEFVTMQSSIFTNLPKRCGRKPKTVVITLLENDQQSDQVFLDFLKNFKMTDPSAYALRSEVVLNGPH
Ga0209060_10000025296F001520AGGAGVNAIKFLVAAYIATWAIHFFYMGTLVTRFRRLQKQRKELGKE
Ga0209060_1000002596F005420N/AMRCGIGLALGIVLLVPALRAQAPEPTIYVESFRKGATHIAEDKFEAHLSPADANYRERIKDAAGNDRYELTISPQGPAGDNKITSWRVQLRDLRHNLYSNLLVADQQPSEDAKDNLWWLNPNPFGPVPLHARRIVKVDGFYVIFHVKDIHFTPLDSPYVDSLVVNFEVTNTAPKISH
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