NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000662

Scaffold Ga0209060_10000662


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000662 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53500
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (81.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003157Metagenome / Metatranscriptome504Y
F008206Metagenome / Metatranscriptome337N
F064903Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000066242F008206AGGAGMSSWTFLFAAALVIWLLLKGPAGKAPLFIQTVCRIAVVFFAYCGFLYLLKWNPFWKWVPSLGFESRNNAEGFLILLSTIVWLIATFRIAFRGLRFRALRAASDGLENRKEDNRSSFSLKNIAIFHYFFYFFSRK
Ga0209060_1000066252F003157AGGCGGMFDPDANQKRENTDLLGFARFGGLDRLDWLMILISVLLGTIAKQHHFLDLSDWFLEWVSPFLLMVFGYKARRKIAEMIESCRDRGKGTPEE
Ga0209060_1000066253F064903GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIIVLEILLGLFFIGCALAARARLRIQAGSQVKKGPEGSTNAKAKWFDRYDVLMILAVIVIYSSLSGLLRGTGVSEGTVGILPLILFAAGILLKPRAVQFIERRRKNRTTDTHDGRSHVHADEKQETAGKETVERCQ
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Institute for Fundamental Biomedical Research
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