NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000866

Scaffold Ga0209060_10000866


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000866 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41591
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F005269Metagenome / Metatranscriptome406Y
F018587Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000086624F000042AGGAGMRNIKFVVRVSRSSDRAPSYVRRMSPTPVQMTTNRKLALMMGRLTAEDAVKCLQTSQRIPELVPVSVLAWRGLEI
Ga0209060_1000086630F018587GGAGMATVSRPLIARARSLRAFIAASLRKMLRMERHDGDFASQRVCPFCGRITPRYETCCLECGKALKAA
Ga0209060_1000086638F005269GGALTISDSNASYAIICYNIRTYRSAGVIAVIRGKHQAELELKKFEDAQDSSDRHEGWRYLIDKTDLEAGTDPAEATLHRQAELEKRESKALQQIDTSNFPSPHRQR
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