NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10002560

Scaffold Ga0209060_10002560


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10002560 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16656
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034740Metagenome174Y
F047937Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000256010F034740AGGAGMSLEKVIFLFVFISCIIPVSAIQQTPNSSAQAAGSQAGAANAAENAQIRQLGNNRGNDAQALREDIRKMRALVAQMESNLAFVDSTQTPLKHQFQLDIDMWNILINQMERRSYSNSR
Ga0209060_100025606F047937AGGAMKRYHRAGALIGVAALLVCAFASQPTSAQSTPQKAPAKAAAPVQTFVGVISDGQCAVKGSHKEVMAKAKVNTQANCVKGCARRYGYVLYVPSTKKIYKLSDQERPAELAAKKVRIKGALDKATQTIYVSSIEPVL
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