NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10012297

Scaffold Ga0209060_10012297


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10012297 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4914
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005062Metagenome / Metatranscriptome413Y
F041358Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_100122973F041358N/AMSNQSASVLQFIRGQEICQIAFGMYDLQFNWGDGGLSCTGRVAYAPSTGGEVVWTEGHPFDAVPVLRLLQQRIESFDGSSEGVLRLRFSNGDRLTVARDDGPEGFTIHQVGQPLIVG
Ga0209060_100122974F005062GGAMKALDKIQCSAGGVASICFLAACTGFSIAQQNPAYPQPPTFRVQSSLVLVDVISKDLKSGLPIRDFKKEDFRLFDNGREVQISTFDAGARYDARSITLWLVVICNESGLPKFGASAEFLGQESLFRSAFDHLETFDRIGVAHWCDNGDSQLDLQPTEDHDKAIQELGETLKPIPFEGGTSASDEAGEQAFRNLIRLIIRDAYLRNPKPLPVIVFLHGDHTGQPHRQLNELVDDFLETSGIVFGIRDARSPNLLFIIGEQAKIMHYMAKHTGGEYFSVPPSEYEKTLQTILMRLHFRYELGFIPPAIDGRRHELRVELTKSAKAEHRGLRLKYRPQYIPVRELPAWAH

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