Scaffold Ga0209060_10049921

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209060_10049921

Scaffold Ga0209060_10049921

Overview

Basic Information
Taxon OID	3300027826 Open in IMG/M
Scaffold ID	Ga0209060_10049921 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2021
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040377	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_100499212	F040377	GGCGG	MTDLVIWPAGHSDWFSCSPDQITWLDRTTLSAGRDPTLHRSPRCPGLRHVQYRWELFSRDTTHAVYLAPYEDGSPGHFKEVQDQAVSTLPPALPRFETHPVELTEGAWVVSVGKWILPLRVSTSEDDPPRPAEPAGTVLGPTKENTVGAQASGSASPALPDAVSKVDGYFKRNGLARMALAYYYRDYILGTVAPRTVPMIDVAIALDLSAEGTVGEFKKELQRRIWNEQHHQRELAQFLLANGLIGRPDLDRALRVAAANEASGRTKLARERLNYRHKR

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