NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209035_10238539

Scaffold Ga0209035_10238539


Overview

Basic Information
Taxon OID3300027827 Open in IMG/M
Scaffold IDGa0209035_10238539 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9831Long. (o)-44.9892Alt. (m)Depth (m)754
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070217Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209035_102385391F070217N/ALLTYLFIILSFAFSQTVEDKTQAVVDTSQVEPDQIKKISTMVLANRITNVSGFERMIIGDLLGDEMMETSAASMVISENQAKEAMGAAFDPNCFSDSCAISIGKSFNLSNVITFGILNVRKIANPAEADTLLAVKDSIITATVIMKNFHIGTGQVVSEMTFPFEGEADKLLMTARRMVWSAVGVEPPPGRFPEDLIDNRVSLKKRILDFYYGTLVPWVQDNTEIAMIIGGIVIISGGWLIFDGGGDDGGFDGPPEFPDDPSSMVPL
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