NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209035_10487463

Scaffold Ga0209035_10487463


Overview

Basic Information
Taxon OID3300027827 Open in IMG/M
Scaffold IDGa0209035_10487463 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9831Long. (o)-44.9892Alt. (m)Depth (m)754
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051453Metagenome144Y
F072735Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209035_104874631F072735N/AMLFRISILICMICISSLSFAQPQHDTVPVVQNNTYKTEDILLLFKSCYETIYFLGNTKYQRTKKILKEEDVSKQCFCICDKVRAKYKPKEFLDKSPIDIHNIITPLTS
Ga0209035_104874632F051453N/AIVLEDSTDFSVNYLLLDADAGSPTATGIMKFITETSSTGTGAAGIKSRLTVTPNSGEVTANDDFGYTETFEYFNDNIDVDVTTGLDVTL

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