Scaffold Ga0209035_10497589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209035_10497589

Scaffold Ga0209035_10497589

Overview

Basic Information
Taxon OID	3300027827 Open in IMG/M
Scaffold ID	Ga0209035_10497589 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	590
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9831	Long. (^o)	-44.9892	Alt. (m)		Depth (m)	754
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018615	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209035_104975891	F018615	AGGA	VKILILLFIILSSCSTPNSRSDAYYEAVAGHIAQTVLSGDCNSKCISSIVSSDLKHATYTQAINVIDKVSKLLPSIYDAIKKELVVRVDEKYKKSF

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