NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209773_10009758

Scaffold Ga0209773_10009758


Overview

Basic Information
Taxon OID3300027829 Open in IMG/M
Scaffold IDGa0209773_10009758 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3642
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000334Metagenome / Metatranscriptome1279Y
F009911Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0209773_100097581F000334N/ASRQQELASSYYGLHEAYRQRETIFAAVMADQADWDAATRGQRCLATAADAELRRRHPGQHYPRLRSAEPQPATQDQRDDLTLPVGQSAPELGQWIKDLAAGHRAFAGTLAERQSLTVPSEDPDYGNLGQAFPPWPGPAGAAILQPPKPEIRPSTQVLRRAGDRDADPEAAD
Ga0209773_100097582F009911GGAGGMTAVAITGMGLTGVLLLTRVYDNVAHVEDHIHTDETSGTWTGLACPGHGLPLGADVDSAALRHLAAEGGEIADLIWEAPDELAAEHAQVFLAAMRAYNAGDSERADRLWENLRAIWSQAWSANYAVLEFMQGTTPS
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