NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209773_10215217

Scaffold Ga0209773_10215217


Overview

Basic Information
Taxon OID3300027829 Open in IMG/M
Scaffold IDGa0209773_10215217 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015894Metagenome / Metatranscriptome251Y
F016330Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0209773_102152171F016330N/ATPSTTRISLQPGDGLGNGTTKPAGPAISGSANGIALAGGSTATLFMRSVAIDDDVFLALTKSRQ
Ga0209773_102152172F015894N/AAVLLAGGLFVASRVVRSMGLTAANAMNTVRTAGGSFRLEKEGEMGPGLPVYPRSSLVVPDDSTAAAAVKEAQNGIEKSTYHTTDTRDFVDEWYGKHLSPQFTRRDAGDKPVPAIFSDARVSDSDIAFVADSGQTVGIVALSLDSGGTKISLIRFSKSSPASAEAPNAAQPASTQPATTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.